Table 2 Classification of tissues represented in the database, with their respective Foundational Model of Anatomy (FMA) codes
From: HIVBrainSeqDB: a database of annotated HIV envelope sequences from brain and other anatomical sites
Brain, brainstem, and spinal cord (n = 1272) | FMA Code | Number of sequences |
|---|---|---|
Brain | FMA:50801 | 171 |
Brainstem | FMA:79876 | 16 |
Caudate nucleus | FMA:61833 | 7 |
Cortex of frontal lobe | FMA:242199 | 67 |
Cortex of occipital lobe | FMA:242205 | 20 |
Cortex of temporal lobe | FMA:242201 | 77 |
Frontal lobe | FMA:61824 | 91 |
Left frontal lobe | FMA:72970 | 214 |
Left hemisphere of cerebellum | FMA:83877 | 1 |
Left occipital lobe | FMA:72976 | 12 |
Left parietal lobe | FMA:72974 | 5 |
Left temporal lobe | FMA:72972 | 17 |
Middle frontal gyrus | FMA:61859 | 10 |
Occipital lobe | FMA:67325 | 25 |
Parietal lobe | FMA:61826 | 3 |
Putamen | FMA:61834 | 1 |
Right frontal lobe | FMA:72969 | 43 |
Right hemisphere of cerebellum | FMA:83876 | 1 |
Right occipital lobe | FMA:72975 | 16 |
Right parietal lobe | FMA:72973 | 18 |
Right temporal lobe | FMA:72971 | 15 |
Set of basal ganglia | FMA:84013 | 87 |
Spinal cord | FMA:7647 | 12 |
Temporal lobe | FMA:61825 | 41 |
White matter of frontal lobe | FMA:256178 | 111 |
White matter of neuraxis | FMA:83929 | 29 |
White matter of occipital lobe | FMA:256188 | 140 |
White matter of temporal lobe | FMA:256186 | 22 |
Meninges, choroid plexus, and CSF (n = 184) | Â | |
Choroid plexus of cerebral hemisphere | FMA:61934 | 44 |
CSF | FMA:20935 | 1 |
Set of meninges | FMA:76821 | 139 |
Blood and lymphoid (n = 776) | Â | Â |
Blood | FMA:9670 | 122 |
Infraclavicular lymph node | FMA:14193 | 4 |
Lymph node | FMA:5034 | 417 |
Mesenteric lymph node | FMA:12795 | 28 |
Peripheral blood mononuclear cell | FMA:86713 | 15 |
Spleen | FMA:7196 | 129 |
T-lymphocyte | FMA:62870 | 61 |
Other (n = 285) | Â | Â |
Bone marrow | FMA:9608 | 31 |
Colon | FMA:14543 | 135 |
Epithelial lining fluid | FMA:276456 | 5 |
Liver | FMA:7197 | 34 |
Lung | FMA:7195 | 78 |
Right lung | FMA:7309 | 2 |