Figure 1
From: Genetic and functional analysis of HIV-1 Rev Responsive Element (RRE) sequences from North-India
HIV-1 RRE variants in North India: HIV-1 RRE sequence analysis and its comparison with a known prototype subtype C (93IN905) [15] and subtype B (pNL4-3) [14]. Five stem loop regions are shown at the top of the sequence. Samples (S1 to E3) were analyzed in this study and compared with other known RRE sequences (with their accession numbers) from India published earlier. Periods indicate similarity and - indicate a deletion. VT1/VT2 and VT5 and VT6 form mother child pairs. Accession numbers FJ649319 to FJ649331 were obtained for all our 13 samples (S1 to E3- sequentially).