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Table 1 Amino acid positions outside RT codon 41-238 contributing to the HIVDR interpretation algorithms. ROI: region of interest

From: A comparative analysis of HIV drug resistance interpretation based on short reverse transcriptase sequences versus full sequences

ROI ARV drugs Stanford virco®TYPE
RT codon 1-40 3TC none 7, 8, 13, 35, 36, 40 (n = 6)
  ABC none 3, 13, 21, 33, 35, 39, 40 (n = 7)
  AZT none none
  d4T none 3, 13, 33, 35, 36, 40 (n = 6)
  ddI none 3, 4, 33, 35, 36, 39, 40 (n = 7)
  TDF none 4, 7, 13, 21, 33, 40 (n = 6)
  EFV none 16, 20, 22, 27, 28, 31, 33, 34 (n = 8)
  NVP none 21, 31, 35 (n = 3)
RT codon 239-400 3TC none 240, 248, 277, 313 (n = 4)
  ABC none 334, 348 (n = 2)
  AZT 333 (n = 1) 240, 242, 244, 245, 282, 296, 297, 313, 334, 335, 350, 357, 359, 360, 375, 377, 386, 395 (n = 18)
  d4T none 334, 348, 357, 359 (n = 4)
  ddI none 348, 359, 360, 395 (n = 4)
  TDF none 242, 245, 249, 277, 297, 329, 334, 335, 353, 357, 359, 395 (n = 12)
  EFV 318 (n = 1) 240, 241, 243, 244, 245, 250, 251, 257, 271, 272, 274, 282, 283, 286, 292, 297, 313, 317, 318,
329, 333, 334, 335, 338, 339, 348, 353, 356, 357, 358, 365, 366, 369, 370, 371, 375, 376, 377,
379, 381, 382, 385, 386, 390, 393, 394, 395, 400 (n = 48)
  NVP 318 (n = 1) 244, 245, 248, 250, 272, 283, 286, 293, 297, 313, 317, 318, 329, 333, 334, 335, 338, 339, 348, 353,
356, 357, 358, 365, 366, 369, 370, 371, 374, 375, 376, 377, 379, 382, 385, 386, 390, 393, 394, 395,
399, 400 (n = 42)