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Table 1 Comparison of genotypic prediction vs phenotype

From: Comparative analysis of cell culture and prediction algorithms for phenotyping of genetically diverse HIV-1 strains from Cameroon

Sample ID

Genotype

Prediction

Ghost cells Assay

06CMARC007

URF

CCR5

CCR5

06CMARC009

CRF02

--

--

06CMARC036

CRF02

--

--

06CMARC058

CRF02

--

--

06CMLPH01OJ

URF

--

--

06CMLPH03VJ

CRF02

--

--

06CMLPH11TT

URF

--

--

06CMLPH016SL

CRF02

--

--

06CMLPH17HT

CRF02

--

--

06CMLPH19CM

URF

--

--

06CMLPH20SL

CRF02

--

--

06CMBDHS019

F2

--

--

06CMBDHS024

URF

--

--

06CMBDHS064

CRF02

--

--

07CMLPH128

CRF02

CXCR4

CCR5

06CMLPH02MG

URF

CXCR4

CXCR4/CCR5

06CMBDSH05

URF

CXCR4

CXCR4/CCR5

  1. Columns indicate sample ID's and their corresponding HIV genotype from partial sequences (gp41/p17/pol), its tropism by prediction and cell culture assay.