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Table 2 The primers used for nested PCR/RT nested PCR amplification

From: Detection of HIV-1 RNA/DNA and CD4 mRNA in feces and urine from chronic HIV-1 infected subjects with and without anti-retroviral therapy

Name

Sequences (5'→3')

Description

ED12

AGT GCT TCC TGC TGC TCC CAA GAA CCC AAG

RT primer for HIV env gp120

ED31

CCT CAG CCA TTA CAC AGG CCT GTC CAA AG

1st round PCR forward primer for HIV env gp120

BH2

CCT TGG TGG GTG CTA CTC CTA ATG GTT CA

1st round PCR reverse primer for HIV env gp120

DR7

TCA ACT CAA CTG CTG TTA AAT GGC AGT CTA GC

2nd round PCR forward primer for HIV env gp120

DR8

CAC TTC TCC AAT TGT CCC TCA TAT CTC CTC C

2nd round PCR reverse primer for HIV env gp120

Hu-CD4 RT primer

ATG TCT TCT GAA ACC GGT GAG GAC ACT G

RT primer for human CD4 mRNA

Hu-CD4 outside F

CCA AGT CTT GGA TCA CCT TTG ACC TGA AG

1st round PCR forward primer for Human CD4 cDNA

Hu-CD4 outside R

AGA AGA AGA TGC CTA GCC CAA TGA AAA GC

1st round PCR reverse primer for Human CD4 cDNA

Hu-CD4 Inside F

CTC CCG CTC CAC CTC ACC CTG

2nd round PCR forward primer for Human CD4 cDNA

Hu-CD4 Inside R

CAT GTG GGC AGA ACC TTG ATG TTG G

2nd round PCR reverse primer for Human CD4 cDNA

B-globin outside F

CTG CTG GTG GTC TAC CCT TGG AC

1st round PCR primer for Human Beta globin DNA

B-globin outside R

CTC AAG TTC TCA GGA TCC A

1st round PCR primer for Human Beta globin DNA

B-globin inside F

GGT TCT TTG AGT CCT TTG GGG ATC

2nd round PCR forward primer for Human Beta globin DNA

B-globin inside R

GTC ACA GTG CAG CTC ACT CAG TGT G

2nd round PCR reverse primer for Human Beta globin DNA

B-actin outside F

GCA CCA CAC CTT CTA CAA TG

1st round PCR primer for Human Beta actin cDNA

B-actin outside R

TGC TTG CTG ATC CAC ATC TG

1st round PCR primer for Human Beta actin cDNA

B-actin inside F

TAC CAC TGG CAT CGT GAT GGA CTC

2nd round PCR primer for Human Beta actin cDNA

B-actin inside R

CGC TCA TTG CCA ATG GTG ATG AC

2nd round PCR primer for Human Beta actin cDNA

Gag outside F

GGC CAT ATC ACC TAG AAC TTT AAA TGC ATG G

1st round PCR primer for HIV Gag

Gag outside R

CCT ACT GGG ATA GGT GGA TTA TTT GTC ATC CA

1st round PCR primer for HIV Gag

Gag inside F

GGC ACA TCA AGC AGC CAT GCA AAT G

2nd round PCR primer for HIV Gag

Gag inside R

TAG TTC CTG CTA TGT CAC TTC CCC TTG G

2nd round PCR primer for HIV Gag